Kirby, WA, Tikhonenkov, DV, Mylnikov, AP, Janouškovec, J, Lax, G, Simpson, AGB*: Characterization of Tulamoeba bucina n. sp., an extremely halotolerant amoeboflagellate heterolobosean belonging to the Tulamoeba-Pleurostomum clade (Tulamoebidae n. fam.). Journal of Eukaryotic Microbiology 62, 227–238, 2015. https://doi.org/10.1111/jeu.12172

Janouškovec, J*, Tikhonenkov, DV, Burki, F, Howe, AT, Kolísko, M, Mylnikov, AP, Keeling, PJ: Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives. PNAS 112, 10200–07, 2015. https://doi.org/10.1073/pnas.1423790112

Flegontov, P, Michálek, J, Janouškovec, J, Lai, DH, Jirků, M, Hajdušková, E, Tomčala, A, Otto, TD, Keeling, PJ, Pain, A, Oborník, M*, Lukeš, J*: Divergent Mitochondrial Respiratory Chains in Phototrophic Relatives of Apicomplexan Parasites. Molecular Biology and Evolution 32(5), 1115-1131, 2015. https://doi.org/10.1093/molbev/msv021

Woo, YH*, Ansari, H, Otto, TD, Klinger, CM, Kolisko, M, Michálek, J, Saxena, A, Shanmugam, D, Tayyrov, A, Veluchamy, A, Ali, S, Bernal, A, del Campo, J, Cihlář, J, Flegontov, P,  Gornik, SG, Hajdušková, E, Horák, A, Janouškovec, J, Katris, NJ, Mast, FD,  Miranda-Saavedra, D, Mourier, T, Naeem, R, Nair, M, Panigrahi, AK, Rawlings, ND, Padron-Regalado, E, Ramaprasad, A, Samad, A, Tomčala, A, Wilkes, J, Neafsey, DE, Doerig, Ch, Bowler, Ch, Keeling, PJ, Roos, DS, Dacks, JB, Templeton, TJ, Waller, RF, Lukeš, J, Oborník, M, Pain, A: Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites. eLife 4, 2015. https://doi.org/10.7554/eLife.06974

Zeng, Y, Selyanin, V, Lukeš, M, Dean, J, Kaftan, D, Feng, F, Koblížek, M: Characterization of microaerophilic bacteriochlorophyll a - containing bacterium Gemmatimonas phototrophica sp. nov. International Journal of Systematic and Evolutionary Microbiology 65 (8), 2410-9, 2015.

Tikhonenkov, DV*, Janouškovec, J, Mylnikov, AP, Mikhailov, KV, Simdyanov, TG, Aleoshin, VV, Keeling, PJ: Description of Colponema vietnamica sp.n. and Acavomonas peruviana n. gen. n. sp., two new alveolate phyla (Colponemidia nom. nov. and Acavomonidia nom. nov.) and their contributions to reconstructing the ancestral state of alveolates and eukaryotes. PLOS ONE 9, e95467, 2014. https://doi.org/10.1371/journal.pone.0095467

Mikhailov, KV, Janouškovec, J, Tikhonenkov, DV, Mirzaeva, GS, Diakin, AY, Simdyanov, TG, Mylnikov, AP, Keeling*, PJ, Aleoshin, VV*: A complex distribution of elongation family GTPases EF1A and EFL in basal alveolate lineages. Genome Biology and Evolution 6, 2361–2367, 2014. https://doi.org/10.1093/gbe/evu186

Lukeš, M, Procházková, L, Shmidt, V, Nedbalová, L, Kaftan, D: Temperature dependence of photosynthesis and thylakoid lipid composition in the red snow alga Chlamydomonas cf. nivalis (Chlorophyceae). FEMS Microbiology Ecology 89(2), 303-315, 2014.

Kaňa, R, Kotabová, E, Lukeš, M, Papáček, S, Matonoha, C, Liu, LN, Prášil, O, Mullineaux, CW: Phycobilisome mobility and its role in the regulation of light harvesting in red algae. Plant Physiology 165(4), 1618-1631, 2014.

Pombert, J-F, Smirnov, A, James, ER, Janouškovec, J, Gray, MW, Keeling PJ*: The complete mitochondrial genome from an unidentified Phalansterium species. Protist Genomics 1, 25–32, 2013. https://doi.org/10.2478/prge-2013-0002

Janouškovec, J*, Horák, A, Barott, KL, Rohwer, FL, Keeling, PJ: Environmental distribution of coral-associated relatives of apicomplexan parasites. The ISME Journal 7, 444–7, 2013. https://doi.org/10.1038/ismej.2012.129

Janouškovec, J*, Liu, S-L, Martone, PT, Carré, W, Leblanc, C, Collén, J, Keeling, PJ: Evolution of red algal plastid genomes: Ancient architectures, introns, horizontal gene transfer, and taxonomic utility of plastid markers. PLOS ONE 8, e59001, 2013. https://doi.org/10.1371/journal.pone.0059001

Janouškovec, J*, Tikhonenkov, DV, Mikhailov, KV, Simdyanov, TG, Aleoshin, VV, Mylnikov, AP, Keeling, PJ*: Colponemids represent multiple ancient alveolate lineages. Current Biology 23, 2546–52, 2013. https://doi.org/10.1016/j.cub.2013.10.062

Janouškovec, J*, Sobotka, R, Lai, D-H, Flegontov, P, Koník, P, Komenda, J, Ali, S, Prášil, O, Pain, A, Oborník, M, Lukeš, J, Keeling, PJ: Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia. Molecular Biology and Evolution 30, 2447–62, 2013. https://doi.org/10.1093/molbev/mst144

Fulnečková, J, Ševčíková, T, Fajkus, J, Lukešová, A, Lukeš, M, Vlček, Č, Lang, BF, Kim, E, Eliáš, M, Sýkorová, E: A Broad Phylogenetic Survey Unveils the Diversity and Evolution of Telomeres in Eukaryotes. Genome Biology and Evolution 5, 468-483, 2013.

Pombert, J-F*, James, ER, Janouškovec, J, Keeling, PJ: Evidence for transitional stages in the evolution of euglenid group II introns and twintrons in the Monomorphina aenigmatica plastid genome. PLOS ONE 7, e53433, 2012.https://doi.org/10.1371/journal.pone.0053433

Janouškovec, J, Horák, A, Barott, KL, Rohwer, FL, Keeling, PJ*: Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs. Current Biology 22, R518-9, 2012. https://doi.org/10.1016/j.cub.2012.04.047

Worden, AZ*, Janouskovec, J, McRose, D, Engman, A, Welsh, RM, Malfatti, S, Tringe, SG, Keeling, PJ: Global distribution of a wild alga revealed by targeted metagenomics. Current Biology 22, R675-7, 2012. https://doi.org/10.1016/j.cub.2012.07.054

Oborník, M, Modrý, D, Lukeš, M, Černotíková-Stříbrná, E, Cihlář, J, Tesařová, M, Kotabová, E, Vancová, M, Prášil, O, Lukeš, J: Morphology, ultrastructure and life cycle of Vitrella bassicaformis n. sp., m. gen., a novel chromerid from the Great Barrier Reef. Protist 163, 306-323, 2012.

Barott, KL*, Rodriguez-Brito, B, Janouškovec, J, Marhaver, K, Smith, JE, Keeling, P, Rohwer, FL: Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis. Environmental Microbiology 13, 1192–204, 2011. https://doi.org/10.1111/j.1462-2920.2010.02419.x