Frommeyer, YN, Sun, J, Wu, J, Kennepohl, B, Witte, J, Gomez, NO, Battermann, J, Becker, L, Cetraro, P, Verstraten, R, Tomasch, J, Pich, A, Depledge, DP, Dedon, PC, Häussler, S*: Dynamic tRNA modification programs align codon usage with growth-phase-specific gene expression in Pseudomonas aeruginosa. PNAS 123(40), e2615985123, 2026. https://doi.org/10.1073/pnas.2615985123

Tomasch, J*, Bartling, P, Vollmers, J, Wöhlbrand, L, Jarek, M, Rohde, M, Brinkmann, H, Freese, HM, Rabus, R, Petersen, J*: Structural and regulatory determinants of flagellar motility in Rhodobacterales—the archetypal flagellum of Phaeobacter inhibens DSM 17395. mSystems 10(8), e0041925, 2025. https://doi.org/10.1128/msystems.00419-25

Vatareck, E, Rick, T, Gomez, NO, Bandyopadhyay, A, Kramer, J, Strunin, D, Erdmann, J, Hartmann, O, Alpers, K, Boedeker, C, Steffen, A, Sieben, C, Zhao, G, Tomasch, J, Häussler, S*: Epigenetic cellular memory in Pseudomonas aeruginosa generates phenotypic variation in presponse to host environments. PNAS 122(27), e2415345122, 2025. https://doi.org/10.1073/pnas.2415345122

Leinberger, J*, Koteska, D, Boldt, J, Petersen, J, Shivaramu, S, Tomasch, J, Schulz, S, Brinkhoff, T*: Chemical quantification of N-acyl alanine methyl ester (NAME) production and impact on temporal gene expression patterns in Roseovarius tolerans EL-164. BMC Microbiology 24, 489, 2024. https://doi.org/10.1186/s12866-024-03624-7

Kopejtka, K, Tomasch, J, Shivaramu, S, Saini, MK, Kaftan, D, Koblížek, M*: Minimal transcriptional regulation of horizontally transferred photosynthesis genes in phototrophic bacterium Gemmatimonas phototrophica. mSystems 9(9), e0070624, 2024. https://doi.org/10.1128/msystems.00706-24

Tomasch, J*, Kopejtka, K, Shivaramu, S, Mujakić, I, Koblížek, M: On the evolution of chromosomal regions with high gene strand bias in bacteria. mBio 15(6), e0060224, 2024. https://doi.org/10.1128/mbio.00602-24

Tomasch, J, Kopejtka, K, Bílý, T, Gardiner, AT, Gardian, Z, Shivaramu, S, Koblížek, M, Kaftan, D*: A photoheterotrophic bacterium from Iceland has adapted its photosynthetic machinery to the long days of polar summer. mSystems 9(3), e0131123, 2024. https://doi.org/10.1128/msystems.01311-23

Mansky, J, Wang, H, Wagner-Döbler, I, Tomasch, J*: The effect of site-specific recombinases XerCD on the removal of over-replicated chromosomal DNA through outer membrane vesicles in bacteria. Microbiology Spectrum 12(3), e0234323, 2024. https://doi.org/10.1128/spectrum.02343-23

Alpers, K, Vatareck, E, Gröbe, L, Müsken, M, Scharfe, M, Häussler, S*, Tomasch, J*: Transcriptome Dynamics of Pseudomonas aeruginosa during Transition from Overlapping To Non-Overlapping Cell Cycles. mSystems 8(2), e0113022, 2023. https://doi.org/10.1128/msystems.01130-22

Shivaramu, S, Tomasch, J, Kopejtka, K, Nupur, Saini, MK, Bokhari, SNH, Küpper, H, Koblížek, M*: The Influence of Calcium on the Growth, Morphology and Gene Regulation in Gemmatimonas phototrophica. Microorganisms 11(1), 27, 2023. https://doi.org/10.3390/microorganisms11010027

Kopejtka, K, Tomasch, J, Kaftan, D, Gardiner, AT, Bína, D, Gardian, Z, Bellas, C, Dröge, A, Geffers, R, Sommaruga, R, Koblížek, M*: A bacterium from a mountain lake harvests light using both proton-pumping xanthorhodopsins and bacteriochlorophyll-based photoystems. PNAS 119(50), e2211018119, 2022. https://doi.org/10.1073/pnas.2211018119

Koppenhöfer, S, Tomasch, J, Ringel, V, Birmes, L, Brinkmann, H, Spröer, C, Jarek, M, Wang, H, Pradella, S, Wagner-Döbler, I, Petersen, J*: The Sixth Element: a 102-kb RepABC Plasmid of Xenologous Origin Modulates Chromosomal Gene Expression in Dinoroseobacter shibae. mSystems 7(4), e00264-22, 2022. https://doi.org/10.1128/msystems.00264-22

Neffe, L, Abendroth, L, Bautsch, W, Häussler, S*, Tomasch, J: High plasmidome diversity of extended-spectrum beta-lactam-resistant Escherichia coli isolates collected during one year in one community hospital. Genomics 114(3), 110368, 2022. https://doi.org/10.1016/j.ygeno.2022.110368

Tomasch, J*, Ringel, V, Wang, H, Freese, HM, Bartling, P, Brinkmann, H, Vollmers, J, Jarek, M, Wagner-Döbler, I, Petersen, J*: Fatal affairs – conjugational transfer of a dinoflagellate-killing plasmid between marine Rhodobacterales. Microbial Genomics 8(3), 000787, 2022. https://doi.org/10.1099/mgen.0.000787

Mansky, J, Wang, H, Ebert, M, Härtig, E, Jahn, D, Tomasch, J, Wagner-Döbler, I*: The Influence of Genes on the “Killer Plasmid” of Dinoroseobacter shibae on Its Symbiosis With the Dinoflagellate Prorocentrum minimum. Frontiers in Microbiology 12, 804767, 2022. https://doi.org/10.3389/fmicb.2021.804767

Koblížek, M*, Hávová, D, Kopejtka, K, Tomasch, J, Bišová, K: Distribution of cycle threshold values in RT-qPCR tests during the autumn 2020 peak of the COVID-19 pandemic in the Czech Republic. Access Microbiology 3(9), 000263, 2021. https://doi.org/10.1099/acmi.0.000263