Centre Algatech

Institute of Michrobiology, Academy of Sciences of the Czech Republic

Publications

PublicationYear

Stojan, I, Šantić, D, Villena-Alemany, C, Trumbić, Ž, Matić, F, Vrdoljak Tomaš, A, Lepen Pleić, I, Piwosz, K, Kušpilić, G, Ninčević Gladan, Ž, Šestanović, S, Šolić, M: Ecology of aerobic anoxygenic phototrophs on a fine‑scale taxonomic resolution in Adriatic Sea unravelled by unsupervised neural network. Environmental Microbiome 19, 28, 2024. https://doi.org/10.1186/s40793-024-00573-6


2024

Koblížek, M*, Ferrera, I, Kolářová, E, Duhamel, S, Popendorf, KJ, Gasol, JM, Van Mooy, BAS: Growth and mortality of aerobic anoxygenic phototrophs in the North Pacific Subtropical Gyre. Applied and Environmental Microbiology 90(4), e0003224, 2024. https://doi.org/10.1128/aem.00032-24


2024

Villena-Alemany, C*, Mujakić, I, Fecskeová, LK, Woodhouse, J, Auladell, A, Dean, J, Hanusová, M, Socha, M, Gazulla, CR, Ruscheweyh, HJ, Sunagawa, S, Kavagutti, VS, Andrei, AS, Grossart, HP, Ghai, R, Koblížek, M, Piwosz, K*: Phenology and ecological role of aerobic anoxygenic phototrophs in freshwaters. Microbiome 12, 65, 2024. https://doi.org/10.1186/s40168-024-01786-0


2024

Tomasch, J, Kopejtka, K, Bílý, T, Gardiner, AT, Gardian, Z, Shivaramu, S, Koblížek, M, Kaftan, D*: A photoheterotrophic bacterium from Iceland has adapted its photosynthetic machinery to the long days of polar summer. mSystems 9(3), e0131123, 2024. https://doi.org/10.1128/msystems.01311-23


2024

Mansky, J, Wang, H, Wagner-Döbler, I, Tomasch, J*: The effect of site-specific recombinases XerCD on the removal of over-replicated chromosomal DNA through outer membrane vesicles in bacteria. Microbiology Spectrum 12(3), e0234323, 2024. https://doi.org/10.1128/spectrum.02343-23


2024

Mujakić, I*, Cabello-Yeves, PJ, Villena-Alemany, C, Piwosz, K, Rodriguez-Valera, F, Picazo, A, Camacho, A, Koblížek, M*: Multi-environment ecogenomics analysis of the cosmopolitan phylum Gemmatimonadota. Microbiology Spectrum 11(5), e0111223, 2023. https://doi.org/10.1128/spectrum.01112-23


2023

Jiao, N*, Zhu, C, Liu, J, Luo, T, Bai, M, Yu, Z, Chen, Q, Rinkevich, B, Weinbauer, M, Thomas, H, Fernández-Méndez, M, López-Abbate, C, Signori, CN, Nagappa, R, Koblížek, M, Kaartokallio, H, Hyun, JH, Jiao, F, Chen, F, Cai, WJ: A roadmap for Ocean Negative Carbon Emission eco-engineering in sea-farming fields. The Innovation Geoscience 1(2), 100029, 2023. https://doi.org/10.59717/j.xinn-geo.2023.100029


2023

Alpers, K, Vatareck, E, Gröbe, L, Müsken, M, Scharfe, M, Häussler, S*, Tomasch, J*: Transcriptome Dynamics of Pseudomonas aeruginosa during Transition from Overlapping To Non-Overlapping Cell Cycles. mSystems 8(2), e0113022, 2023. https://doi.org/10.1128/msystems.01130-22


2023

Muñoz-Gómez, SA*, Cadena, LR, Gardiner, AT, Leger, MM, Sheikh, S, Connell, LB, Bilý, T, Kopejtka, K, Beatty, JT, Koblížek, M, Roger, AJ, Slamovits, CH, Lukeš, J, Hashimi, H*: Intracytoplasmic-membrane development in alphaproteobacteria involves the homolog of the mitochondrial crista-developing protein Mic60. Current Biology 33(6), 1099-1111, 2023. https://doi.org/10.1016/j.cub.2023.02.059


2023

Shivaramu, S, Tomasch, J, Kopejtka, K, Nupur, Saini, MK, Bokhari, SNH, Küpper, H, Koblížek, M*: The Influence of Calcium on the Growth, Morphology and Gene Regulation in Gemmatimonas phototrophica. Microorganisms 11(1), 27, 2023. https://doi.org/10.3390/microorganisms11010027


2023

Gardiner, TA, Mujakić, I, Bína, D, Gardian, Z, Kopejtka, K, Nupur, Qian, P, Koblížek, M*: Characterisation of the photosynthetic complexes from the marine gammaproteobacterium Congregibacter litoralis KT71. Biochimica et Biophysica Acta (BBA) - Bioenergetics 1864(2), 148946, 2023. https://doi.org/10.1016/j.bbabio.2022.148946


2023

Villena-Alemany, C, Mujakić, I, Porcal, P, Koblížek, M, Piwosz, K*: Diversity dynamics of aerobic anoxygenic phototrophic bacteria in a freshwater lake. Environmental Microbiology Reports 15(1), 60-71, 2023. https://doi.org/10.1111/1758-2229.13131


2023

Cupellini, L*, Qian, P, Nguyen-Phan, TC, Gardiner, AT, Cogdell, RJ: Quantum chemical elucidation of a sevenfold symmetric bacterial antenna complex. Photosynthesis Research 156, 75-87, 2023. https://doi.org/10.1007/s11120-022-00925-8


2023

Kaftan, D: O čem neměla Baba Vanga ani ponětí? Bulletin Československé společnosti mikrobiologické LXII(1), 22-27, 2022.


2022

Kopejtka, K, Tomasch, J, Kaftan, D, Gardiner, AT, Bína, D, Gardian, Z, Bellas, C, Dröge, A, Geffers, R, Sommaruga, R, Koblížek, M*: A bacterium from a mountain lake harvests light using both proton-pumping xanthorhodopsins and bacteriochlorophyll-based photoystems. PNAS 119(50), e2211018119, 2022. https://doi.org/10.1073/pnas.2211018119


2022

Elvers, I, Nguyen-Phan, TC, Gardiner, AT, Hunter, CN, Cogdell, RJ, Köhler, J*: Phasor Analysis Reveals Multicomponent Fluorescence Kinetics in the LH2 Complex from Marichromatium purpuratum. The Journal of Physical Chemistry B 126(49), 10335-10346, 2022. https://doi.org/10.1021/acs.jpcb.2c04983


2022

Yukihira, N, Uragami, C, Horiuchi, K, Kosumi, D, Gardiner, AT, Cogdell, RJ, Hashimoto, H: Intramolecular charge-transfer enhances energy transfer efficiency in carotenoid-reconstituted light-harvesting 1 complex of purple photosynthetic bacteria. Communications Chemistry 5, 135, 2022. https://doi.org/10.1038/s42004-022-00749-6


2022

Qian, P, Nguyen-Phan, CT, Gardiner, AT, Croll, TI, Roszak, AW, Southall, J, Jackson, PJ, Vasilev, C, Castro-Hartmann, P, Sader, K, Hunter, CN, Cogdell, RJ*: Cryo-EM structures of light-harvesting 2 complexes from Rhodopseudomonas palustris reveal the molecular origin of absorption tuning. PNAS 119(43), e2210109119, 2022. https://doi.org/10.1073/pnas.2210109119


2022

Šímová, I, Kuznetsova, V, Gardiner, AT, Šebelík, V, Koblížek, M, Fuciman, M, Polívka, T*: Carotenoid responds to excess energy dissipation in the LH2 complex from Rhodoblastus acidophilus. Photosynthesis Research 154(1), 75-87, 2022. https://doi.org/10.1007/s11120-022-00952-5


2022

Koppenhöfer, S, Tomasch, J, Ringel, V, Birmes, L, Brinkmann, H, Spröer, C, Jarek, M, Wang, H, Pradella, S, Wagner-Döbler, I, Petersen, J*: The Sixth Element: a 102-kb RepABC Plasmid of Xenologous Origin Modulates Chromosomal Gene Expression in Dinoroseobacter shibae. mSystems 7(4), e00264-22, 2022. https://doi.org/10.1128/msystems.00264-22


2022
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