Publications
Publication | Year |
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Zrzavý, J*, Říha, P, Piálek, L, Janouškovec, J: Phylogeny of Annelida (Lophotrochozoa): total-evidence analysis of morphology and six genes. BMC Evolutionary Biology 9, 189, 2009. https://doi.org/10.1186/1471-2148-9-189 | 2009 |
Záhonová, K, Petrželková, R, Valach, M, Yazaki, E, Tikhonenkov, DV, Butenko, A, Janouškovec, J, Hrdá, Š, Klimeš, V, Burger, G, Inagaki, Y, Keeling, PJ, Hampl, V, Flegontov, P, Yurchenko V, Eliáš M*: Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase. Scientific Reports 8, 5239, 2018. https://doi.org/10.1038/s41598-018-23575-0 | 2018 |
Worden, AZ*, Janouskovec, J, McRose, D, Engman, A, Welsh, RM, Malfatti, S, Tringe, SG, Keeling, PJ: Global distribution of a wild alga revealed by targeted metagenomics. Current Biology 22, R675-7, 2012. https://doi.org/10.1016/j.cub.2012.07.054 | 2012 |
Woo, YH*, Ansari, H, Otto, TD, Klinger, CM, Kolisko, M, Michálek, J, Saxena, A, Shanmugam, D, Tayyrov, A, Veluchamy, A, Ali, S, Bernal, A, del Campo, J, Cihlář, J, Flegontov, P, Gornik, SG, Hajdušková, E, Horák, A, Janouškovec, J, Katris, NJ, Mast, FD, Miranda-Saavedra, D, Mourier, T, Naeem, R, Nair, M, Panigrahi, AK, Rawlings, ND, Padron-Regalado, E, Ramaprasad, A, Samad, A, Tomčala, A, Wilkes, J, Neafsey, DE, Doerig, Ch, Bowler, Ch, Keeling, PJ, Roos, DS, Dacks, JB, Templeton, TJ, Waller, RF, Lukeš, J, Oborník, M, Pain, A: Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites. eLife 4, 2015. https://doi.org/10.7554/eLife.06974 | 2015 |
Tikhonenkov, DV*, Strassert, JFH*, Janouškovec, J, Mylnikov, AP, Aleoshin, VV, Burki, F, Keeling, PJ: Predatory colponemids are the sister group to all other alveolates. Molecular Phylogenetics and Evolution 149, 106839, 2020. https://doi.org/10.1016/j.ympev.2020.106839 | 2020 |
Tikhonenkov, DV*, Janouškovec, J, Mylnikov, AP, Mikhailov, KV, Simdyanov, TG, Aleoshin, VV, Keeling, PJ: Description of Colponema vietnamica sp.n. and Acavomonas peruviana n. gen. n. sp., two new alveolate phyla (Colponemidia nom. nov. and Acavomonidia nom. nov.) and their contributions to reconstructing the ancestral state of alveolates and eukaryotes. PLOS ONE 9, e95467, 2014. https://doi.org/10.1371/journal.pone.0095467 | 2014 |
Tikhonenkov, DV, Janouškovec, J, Keeling, PJ, Mylnikov, AP*: The morphology, ultrastructure and SSU rRNA gene sequence of a new freshwater flagellate, Neobodo borokensis n. sp. (Kinetoplastea, Excavata). Journal of Eukaryotic Microbiology 63, 220–32, 2016. https://doi.org/10.1111/jeu.12271 | 2016 |
Strassert, JFH*, Karnkowska, A, Hehenberger, E, del Campo, J, Kolisko, M, Okamoto, N, Burki, F, Janouškovec, J, Poirier, C, Leonard, G, Hallam, SJ, Richards, TA, Worden, AZ, Santoro, AE, Keeling, PJ: Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates. The ISME Journal 12, 304–308, 2018. https://doi.org/10.1038/ismej.2017.167 | 2018 |
Pombert, J-F*, James, ER, Janouškovec, J, Keeling, PJ: Evidence for transitional stages in the evolution of euglenid group II introns and twintrons in the Monomorphina aenigmatica plastid genome. PLOS ONE 7, e53433, 2012.https://doi.org/10.1371/journal.pone.0053433 | 2012 |
Pombert, J-F, Smirnov, A, James, ER, Janouškovec, J, Gray, MW, Keeling PJ*: The complete mitochondrial genome from an unidentified Phalansterium species. Protist Genomics 1, 25–32, 2013. https://doi.org/10.2478/prge-2013-0002 | 2013 |
Paskerova, GG*, Miroliubova, TS, Valigurová, A, Janouškovec, J, Kováčiková, M, Diakin, A, Sokolova, YY, Mikhailov, KV, Aleoshin, VV, Simdyanov, TG: Evidence from the resurrected family Polyrhabdinidae Kamm, 1922 (Apicomplexa: Gregarinomorpha) supports the epimerite, an attachment organelle, as a major eugregarine innovation. PeerJ 9, e11912, 2021. https://doi.org/10.7717/peerj.11912 | 2021 |
Oborník, M*, Janouškovec, J, Chrudimský, T, Lukeš, J: Evolution of the apicoplast and its hosts: from heterotrophy to autotrophy and back again. International Journal for Parasitology 39, 1–12, 2009. https://doi.org/10.1016/j.ijpara.2008.07.010 | 2009 |
Oborník, M, Vancová, M, Lai, D-H, Janouškovec, J, Keeling, PJ, Lukeš, J*: Morphology and ultrastructure of multiple life cycle stages of the photosynthetic relative of Apicomplexa, Chromera velia. Protist 162, 115–30, 2011. https://doi.org/10.1016/j.protis.2010.02.004 | 2011 |
Moore, RB, Oborník, M, Janouškovec, J, Chrudimský, T, Vancová, M, Green, DH, Wright, SW, Davies, NW, Bolch, CJS, Heimann, K, Slapeta, J, Hoegh-Guldberg, O, Logsdon, JM, Carter, DA*: A photosynthetic alveolate closely related to apicomplexan parasites. Nature 451, 959–63, 2008. https://doi.org/10.1038/nature06635 | 2008 |
Miroliubova, TS*, Simdyanov, TG, Mikhailov, KV, Aleoshin, VV, Janouškovec, J, Belova, PA, Paskerova GG: Polyphyletic origin, intracellular invasion, and meiotic genes in the putatively asexual agamococcidians (Apicomplexa incertae sedis ). Scientific Reports 10, 15847, 2020. https://doi.org/10.1038/s41598-020-72287-x | 2020 |
Mikhailov, KV, Nassonova, ES, Shishkin, YA, Paskerova, GG, Simdyanov, TG, Yudina, VA, Smirnov, AV, Janouškovec, J, Aleoshin, VV*: Ribosomal RNA of Metchnikovellids in Gregarine Transcriptomes and rDNA of Microsporidia Sensu Lato in Metagenomes. Zhurnal Obshchei Biologii 82(3), 201-228, 2022. https://doi.org/10.1134/S2079086422030069 | 2022 |
Mikhailov, KV, Janouškovec, J, Tikhonenkov, DV, Mirzaeva, GS, Diakin, AY, Simdyanov, TG, Mylnikov, AP, Keeling*, PJ, Aleoshin, VV*: A complex distribution of elongation family GTPases EF1A and EFL in basal alveolate lineages. Genome Biology and Evolution 6, 2361–2367, 2014. https://doi.org/10.1093/gbe/evu186 | 2014 |
Leliaert, F*, Kelly, ELA*, Janouškovec, J, Fox, MD, Johnson, MD, Redfern, FM, Eria, T, Haas, AF, Sala, E, Sandin, SA, Smith, JE*: Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean. Journal of Phycology 58(2), 183-197, 2022. https://doi.org/10.1111/jpy.13230 | 2022 |
Kořený, L, Sobotka, R, Janouškovec, J, Keeling, PJ, Oborník, M*: Tetrapyrrole synthesis of photosynthetic chromerids is likely homologous to the unusual pathway of apicomplexan parasites. The Plant Cell 23, 3454–62, 2011. https://doi.org/10.1105/tpc.111.089102 | 2011 |
Kirby, WA, Tikhonenkov, DV, Mylnikov, AP, Janouškovec, J, Lax, G, Simpson, AGB*: Characterization of Tulamoeba bucina n. sp., an extremely halotolerant amoeboflagellate heterolobosean belonging to the Tulamoeba-Pleurostomum clade (Tulamoebidae n. fam.). Journal of Eukaryotic Microbiology 62, 227–238, 2015. https://doi.org/10.1111/jeu.12172 | 2015 |