Mikhailov, KV, Nassonova, ES, Shishkin, YA, Paskerova, GG, Simdyanov, TG, Yudina, VA, Smirnov, AV, Janouškovec, J, Aleoshin, VV*: Ribosomal RNA of Metchnikovellids in Gregarine Transcriptomes and rDNA of Microsporidia Sensu Lato in Metagenomes. Zhurnal Obshchei Biologii 82(3), 201-228, 2022. https://doi.org/10.1134/S2079086422030069

Leliaert, F*, Kelly, ELA*, Janouškovec, J, Fox, MD, Johnson, MD, Redfern, FM, Eria, T, Haas, AF, Sala, E, Sandin, SA, Smith, JE*: Brilliantia kiribatiensis, a new genus and species of Cladophorales (Chlorophyta) from the remote coral reefs of the Southern Line Islands, Pacific Ocean. Journal of Phycology 58(2), 183-197, 2022. https://doi.org/10.1111/jpy.13230

Paskerova, GG*, Miroliubova, TS, Valigurová, A, Janouškovec, J, Kováčiková, M, Diakin, A, Sokolova, YY, Mikhailov, KV, Aleoshin, VV, Simdyanov, TG: Evidence from the resurrected family Polyrhabdinidae Kamm, 1922 (Apicomplexa: Gregarinomorpha) supports the epimerite, an attachment organelle, as a major eugregarine innovation. PeerJ 9, e11912, 2021. https://doi.org/10.7717/peerj.11912

Borodina, AS, Mylnikov, AP, Janouškovec, J, Keeling, PJ, Tikhonenkov, DV*: The Morphology, Ultrastructure and Molecular Phylogeny of a New Freshwater Heterolobose Amoeba Parafumarolamoeba stagnalis n. Sp. (Vahlkampfiidae; Heterolobosea). Diversity 13(9), 433, 2021. https://doi.org/10.3390/d13090433

Knoppová, J, Yu, J, Janouškovec, J, Halada, P, Nixon, PJ, Whitelegge, JP, Komenda, J*: The Photosystem II Assembly Factor Ycf48 from the Cyanobacterium Synechocystis sp. PCC 6803 Is Lipidated Using an Atypical Lipobox Sequence. International Journal of Molecular Sciences 22(7), 3733, 2021. https://doi.org/10.3390/ijms22073733

Tikhonenkov, DV*, Strassert, JFH*, Janouškovec, J, Mylnikov, AP, Aleoshin, VV, Burki, F, Keeling, PJ: Predatory colponemids are the sister group to all other alveolates. Molecular Phylogenetics and Evolution 149, 106839, 2020. https://doi.org/10.1016/j.ympev.2020.106839

Miroliubova, TS*, Simdyanov, TG, Mikhailov, KV, Aleoshin, VV, Janouškovec, J, Belova, PA, Paskerova GG: Polyphyletic origin, intracellular invasion, and meiotic genes in the putatively asexual agamococcidians (Apicomplexa incertae sedis ). Scientific Reports 10, 15847, 2020. https://doi.org/10.1038/s41598-020-72287-x

John, U*, Lu, Y, Wohlrab, S, Groth, M, Janouškovec, J, Kohli, GS, Mark, FC, Bickmeyer, U, Farhat, S, Felder, M, Frickenhaus, S, Guillou, L, Keeling, PJ, Moustafa, A, Porcel, BM, Valentin, K, Glöckner, G*: An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome. Science Advances 5, eaav1110, 2019. https://doi.org/10.1126/sciadv.aav1110

Janouškovec, J*, Paskerova, GG, Miroliubova, TS, Mikhailov, KV, Birley, T, Aleoshin, VV, Simdyanov, TG: Apicomplexan-like parasites are polyphyletic and widely but selectively dependent on cryptic plastid organelles. eLife 8, e49662, 2019. https://doi.org/10.7554/eLife.49662

Záhonová, K, Petrželková, R, Valach, M, Yazaki, E, Tikhonenkov, DV, Butenko, A, Janouškovec, J, Hrdá, Š, Klimeš, V, Burger, G, Inagaki, Y, Keeling, PJ, Hampl, V, Flegontov, P, Yurchenko V, Eliáš M*: Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase. Scientific Reports 8, 5239, 2018. https://doi.org/10.1038/s41598-018-23575-0

Strassert, JFH*, Karnkowska, A, Hehenberger, E, del Campo, J, Kolisko, M, Okamoto, N, Burki, F, Janouškovec, J, Poirier, C, Leonard, G, Hallam, SJ, Richards, TA, Worden, AZ, Santoro, AE, Keeling, PJ: Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates. The ISME Journal 12, 304–308, 2018. https://doi.org/10.1038/ismej.2017.167

Bass, D*, Tikhonenkov, DV, Foster, R, Dyal, P, Janouškovec, J, Keeling, PJ, Gardner, M, Neuhauser, S, Hartikainen, H, Mylnikov, AP, Berney, C: Rhizarian ‘Novel Clade 10’ revealed as abundant and diverse planktonic and terrestrial flagellates, including Aquavolon n. gen. Journal of Eukaryotic Microbiology 65, 828–842, 2018. https://doi.org/10.1111/jeu.12524

Janouškovec, J*, Gavelis, GS, Burki, F, Dinh, D, Bachvaroff, TR, Gornik, SG, Bright, KJ, Imanian, B, Strom, SL, Delwiche, CF, Waller, RF, Fensome, RA, Leander, BS, Rohwer, FL, Saldarriaga, JF: Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics. Proceedings of the National Academy of Sciences 114, E171–E180, 2017. https://doi.org/10.1073/pnas.1614842114

del Cortona, A, Leliaert, F, Bogaert, KA, Turmel, M, Boedeker, C, Janouškovec, J, Lopez-Bautista, JM, Verbruggen, H, Vandepoele, K, De Clerck, O*: The plastid genome in Cladophorales green algae is encoded by hairpin chromosomes. Current Biology 27, 3771-3782.e6, 2017. https://doi.org/10.1016/j.cub.2017.11.004

Janouškovec, J*, Tikhonenkov, DV, Burki, F, Howe, AT, Rohwer, FL, Mylnikov, AP, Keeling, PJ: A new lineage of eukaryotes illuminates early mitochondrial genome reduction. Current Biology 27, 3717-3724.e5, 2017. https://doi.org/10.1016/j.cub.2017.10.051

Janouskovec, J*, Keeling, PJ*: Evolution: Causality and the origin of parasitism. Current Biology 26, R174–R177, 2016. https://doi.org/10.1016/j.cub.2015.12.057

Tikhonenkov, DV, Janouškovec, J, Keeling, PJ, Mylnikov, AP*: The morphology, ultrastructure and SSU rRNA gene sequence of a new freshwater flagellate, Neobodo borokensis n. sp. (Kinetoplastea, Excavata). Journal of Eukaryotic Microbiology 63, 220–32, 2016. https://doi.org/10.1111/jeu.12271

Kirby, WA, Tikhonenkov, DV, Mylnikov, AP, Janouškovec, J, Lax, G, Simpson, AGB*: Characterization of Tulamoeba bucina n. sp., an extremely halotolerant amoeboflagellate heterolobosean belonging to the Tulamoeba-Pleurostomum clade (Tulamoebidae n. fam.). Journal of Eukaryotic Microbiology 62, 227–238, 2015. https://doi.org/10.1111/jeu.12172

Janouškovec, J*, Tikhonenkov, DV, Burki, F, Howe, AT, Kolísko, M, Mylnikov, AP, Keeling, PJ: Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives. PNAS 112, 10200–07, 2015. https://doi.org/10.1073/pnas.1423790112

Flegontov, P, Michálek, J, Janouškovec, J, Lai, DH, Jirků, M, Hajdušková, E, Tomčala, A, Otto, TD, Keeling, PJ, Pain, A, Oborník, M*, Lukeš, J*: Divergent Mitochondrial Respiratory Chains in Phototrophic Relatives of Apicomplexan Parasites. Molecular Biology and Evolution 32(5), 1115-1131, 2015. https://doi.org/10.1093/molbev/msv021