Laboratory of Photosynthesis
Roman Sobotka`s group
Photosynthetic pigments
Publications
| Publication | Year |
|---|---|
Zhao, Z, Vercellino, I, Knoppová, J, Sobotka, R, Murray, JW, Nixon, PJ*, Sazanov, LA*, Komenda, J*: The Ycf48 accessory factor occupies the site of the oxygen-evolving manganese cluster during photosystem II biogenesis. Nature Communications 14, 4681, 2023. https://doi.org/10.1038/s41467-023-40388-6 | 2023 |
Yu, J*, Knoppová, J, Michoux, F, Bialek, W, Cota, E, Shukla, MK, Strašková, A, Pascual Aznar, G, Sobotka, R, Komenda, J, Murray, JW, Nixon, PJ*: Ycf48 involved in the biogenesis of the oxygen-evolving photosystem II complex is a seven-bladed beta-propeller protein. Proceedings of the National Academy of Sciences of the United States of America 115(33), E7824-E7833, 2018. https://doi.org/10.1073/pnas.1800609115 | 2018 |
West, R, Keşan, G, Trsková, E, Sobotka, R, Kaňa, R, Fuciman, M, Polívka, T: Spectroscopic properties of the triple bond carotenoid alloxanthin. Chemical Physics Letters 653, 167–172, 2016. | 2016 |
Watzer, B, Spät, P, Neumann, N, Koch, M, Sobotka, R, Macek, B, Hennrich, O, Forchhammer, K*: The Signal Transduction Protein P-II Controls Ammonium, Nitrate and Urea Uptake in Cyanobacteria. Frontiers in Microbiology 10, 1428, 2019. https://dx.doi.org/10.3389%2Ffmicb.2019.01428 | 2019 |
Wallner, T, Hagiwara, Y, Bernát, G, Sobotka, R, Reijerse, EJ, Frankenberg-Dinkel, N, Wilde, A: Inactivation of the conserved open reading frame ycf34 of Synechocystis sp. PCC6803 interferes dwith the photosynthetic electron transport chain. Biochimica et Biophysica Acta 1817, 2016-2026, 2012. | 2012 |
Vaňková, K, Marková, I, Jašprová, J, Dvořák, A, Subhanová, I, Zelenka, J, Novosádová, I, Rasl, J, Vomastek, T, Sobotka, R, Muchová, L, Vítek, L*: Chlorophyll-Mediated Changes in the Redox Status of Pancreatic Cancer Cells Are Associated with Its Anticancer Effects. Oxidative Medicine and Cellular Longevity, 4069167, 2018. https://doi.org/10.1155/2018/4069167 | 2018 |
Trinugroho, JP, Bečková, M, Shao, S, Yu, J, Zhao, Z, Murray, JW, Sobotka, R, Komenda, J, Nixon, PJ*: Chlorophyll II f synthesis by a super-rogue photosystem II complex. Nature Plants 6, 238-244, 2020. https://doi.org/10.1038/s41477-020-0616-4 | 2020 |
Torzillo, G, Faraloni, C, Silva, AM, Kopecký, J, Pilný, J, Masojídek J: Photoacclimation of Phaeodactylum tricornutum (Bacillariophyceae) cultures grown outdoors in photobioreactors and open ponds. European Journal of Phycology 47, 169-181, 2012. | 2012 |
Tokarz, KM*, Wesolowski, W, Tokarz, B, Makowski, W, Wysocka, A, Jedrzejczyk, RJ, Chrabaszcz, K, Malek, K, Kostecka-Gugala, A: Stem Photosynthesis – A Key Element of Grass Pea (Lathyrus sativus L.) Acclimatisation to Salinity. International Journal of Molecular Sciences 22(2), 685, 2021. https://doi.org/10.3390/ijms22020685 | 2021 |
Tichý, M, Bečková, M, Kopečná, J, Noda, J, Sobotka, R, Komenda, J: Strain of Synechocystis PCC 6803 with aberrant assembly of Photosystem II contains tandem duplication of a large chromosomal region. Frontiers in Plant Science 7, 648, 2016. | 2016 |
Staleva, H, Komenda, J, Shukla, MK, Šlouf, V, Kaňa, R, Polívka, T, Sobotka, R: Mechanism of photoprotection in the cyanobacterial ancestor of plant antenna protein. Nature Chemical Biology 11, 287-291, 2015. | 2015 |
Sobotka, R., McLean, S., Žuberová, M., Hunter, C.N., Tichý, M. (2008) The C-Terminal extension of ferrochelatase is critical for enzyme aktivity and for functioning of the tetrapyrrole pathway in Synechocystis strain PCC 6803. Journal of Bacteriology 190, 2086-2095. | 2008 |
Sobotka, R., Komenda, J., Bumba, L., Tichý, M. (2005) Photosystem II assembly in CP47 mutant of Synechocystis sp. PCC 6803 is dependent on the level of chlorophyll precursors regulated by ferrochelatase. Journal of Biological Chemistry 280, 31595-31602. | 2005 |
Sobotka, R., Dühring, U., Komenda, J., Peter, E., Gardian, Z., Tichý, M., Grimm, B., Wilde, A. (2008) Improtance of the cyanobacterial Gun4 protein for chlorophyll metabolism and assembly of photosynthetic complexes. Journal of Biological Chemistry 283, 25794-25802. | 2008 |
Sobotka, R: Making proteins green; biosynthesis of chlorophyll-binding proteins in cyanobacteria. Photosynthesis Research 119, 223-232, 2014. | 2014 |
Sobotka, R, Tichý, M, Wilde, A, Hunter, AN: Functional assignments for the carboxyl-terminal domains of the ferrochelatase from Synechocystis PCC 6803: The CAB domain plays a regulatory role, and region II is essential for catalysis1[W]. Plant Physiology 155, 1735-1747, 2011. | 2011 |
Schwark, M, Yerena, JAM, Röhrborn, K, Hrouzek, P, Divoká, P, Štenclová, L, Delawská, K, Enke, H, Vorreiter, C, Wiley, F, Sippl, W, Sobotka, R, Saha, S, Wilde, SB, Mareš, J*, Niedermeyer, THJ*: More than just an eagle killer: The freshwater cyanobacterium Aetokthonos hydrillicola produces highly toxic dolastatin derivatives. PNAS 120(40), e2219230120, 2023. https://doi.org/10.1073/pnas.2219230120 | 2023 |
Schmidt, N, Stappert, N, Nimura-Matsune, K, Watanabe, S, Sobotka, R, Hagemann, M*, Hess, WR*: Epigenetic control of tetrapyrrole biosynthesis by m4C DNA methylation in a cyanobacterium. DNA Research 31(6), dsae035, 2024. https://doi.org/10.1093/dnares/dsae035 | 2024 |
Sedláček, I*, Holochová, P, Busse, HJ, Koublová, V, Králová, S, Švec, P, Sobotka, R, Staňková, E, Pilný, J, Šedo, O, Smolíková, J, Sedlář, K: Characterisation of Waterborne Psychrophilic Massilia Isolates with Violacein Production and Description of Massilia antarctica sp. nov. Microorganisms 10(4), 704, 2022. https://doi.org/10.3390/microorganisms10040704 | 2022 |
Sedláček, I*, Holochová, P, Sobotka, R, Busse, HJ, Švec, P, Králová, S, Šedo, O, Pilný, J, Staňková, E, Koublová, V, Sedlář, K: Classification of a Violacein-Producing Psychrophilic Group of Isolates Associated with Freshwater in Antarctica and Description of Rugamonas violacea sp. nov. Microbiology Spectrum 9(1), e00452-21, 2021. https://doi.org/10.1128/Spectrum.00452-21 | 2021 |