John, U*, Lu, Y, Wohlrab, S, Groth, M, Janouškovec, J, Kohli, GS, Mark, FC, Bickmeyer, U, Farhat, S, Felder, M, Frickenhaus, S, Guillou, L, Keeling, PJ, Moustafa, A, Porcel, BM, Valentin, K, Glöckner, G*: An aerobic eukaryotic parasite with functional mitochondria that likely lacks a mitochondrial genome. Science Advances 5, eaav1110, 2019. https://doi.org/10.1126/sciadv.aav1110

Janouškovec, J*, Paskerova, GG, Miroliubova, TS, Mikhailov, KV, Birley, T, Aleoshin, VV, Simdyanov, TG: Apicomplexan-like parasites are polyphyletic and widely but selectively dependent on cryptic plastid organelles. eLife 8, e49662, 2019. https://doi.org/10.7554/eLife.49662

Lukeš, M*, Giordano, M, Prášil, O: The effect of light quality and quantity on carbon allocation in Chromera velia. Folia Microbiologica 64(5), 655-662, 2019. https://doi.org/10.1007/s12223-019-00734-y

Záhonová, K, Petrželková, R, Valach, M, Yazaki, E, Tikhonenkov, DV, Butenko, A, Janouškovec, J, Hrdá, Š, Klimeš, V, Burger, G, Inagaki, Y, Keeling, PJ, Hampl, V, Flegontov, P, Yurchenko V, Eliáš M*: Extensive molecular tinkering in the evolution of the membrane attachment mode of the Rheb GTPase. Scientific Reports 8, 5239, 2018. https://doi.org/10.1038/s41598-018-23575-0

Strassert, JFH*, Karnkowska, A, Hehenberger, E, del Campo, J, Kolisko, M, Okamoto, N, Burki, F, Janouškovec, J, Poirier, C, Leonard, G, Hallam, SJ, Richards, TA, Worden, AZ, Santoro, AE, Keeling, PJ: Single cell genomics of uncultured marine alveolates shows paraphyly of basal dinoflagellates. The ISME Journal 12, 304–308, 2018. https://doi.org/10.1038/ismej.2017.167

Bass, D*, Tikhonenkov, DV, Foster, R, Dyal, P, Janouškovec, J, Keeling, PJ, Gardner, M, Neuhauser, S, Hartikainen, H, Mylnikov, AP, Berney, C: Rhizarian ‘Novel Clade 10’ revealed as abundant and diverse planktonic and terrestrial flagellates, including Aquavolon n. gen. Journal of Eukaryotic Microbiology 65, 828–842, 2018. https://doi.org/10.1111/jeu.12524

Masuda, T, Bernát, G, Bečková, M, Kotabová, E, Lawrenz, E, Lukeš, M, Komenda, J, Prášil, O*: Diel regulation of photosynthetic activity in the oceanic unicellular diazotrophic cyanobacterium Crocosphaera watsonii WH8501. Environmental Microbiology 20(2), 546-560, 2018. https://doi.org/10.1111/1462-2920.13963

Janouškovec, J*, Gavelis, GS, Burki, F, Dinh, D, Bachvaroff, TR, Gornik, SG, Bright, KJ, Imanian, B, Strom, SL, Delwiche, CF, Waller, RF, Fensome, RA, Leander, BS, Rohwer, FL, Saldarriaga, JF: Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics. Proceedings of the National Academy of Sciences 114, E171–E180, 2017. https://doi.org/10.1073/pnas.1614842114

del Cortona, A, Leliaert, F, Bogaert, KA, Turmel, M, Boedeker, C, Janouškovec, J, Lopez-Bautista, JM, Verbruggen, H, Vandepoele, K, De Clerck, O*: The plastid genome in Cladophorales green algae is encoded by hairpin chromosomes. Current Biology 27, 3771-3782.e6, 2017. https://doi.org/10.1016/j.cub.2017.11.004

Janouškovec, J*, Tikhonenkov, DV, Burki, F, Howe, AT, Rohwer, FL, Mylnikov, AP, Keeling, PJ: A new lineage of eukaryotes illuminates early mitochondrial genome reduction. Current Biology 27, 3717-3724.e5, 2017. https://doi.org/10.1016/j.cub.2017.10.051

Lukeš, M*, Giordano, M, Prášil, O: The effect of environmental factors on fatty acid composition of Chromera velia (Chromeridae). Journal of Applied Phycology 29(4), 1791-1799, 2017. https://doi.org/10.1007/s10811-017-1114-6

Felcmanová, K, Lukeš, M, Kotabová, E, Lawrenz, E, Halsey, KH, Prášil, O*: Carbon use efficiencies and allocation strategies in Prochlorococcus marinus strain PCC 9511 during nitrogen-limited growth. Photosynthesis Research 134(1), 71-82, 2017. https://doi.org/10.1007/s11120-017-0418-3

Voráčová, K, Hájek, J, Mareš, J, Urajová, P, Kuzma, M, Cheel, J, Villunger, A, Kapuscik, A, Bally, M, Novák, P, Kabeláč, M, Krumschnabel, G, Lukeš, M, Voloshko, L, Kopecký, J, Hrouzek, P*: The cyanobacterial metabolite nocuolin a is a natural oxadiazine that triggers apoptosis in human cancer cells. PLoS One 12(3), e0172850, 2017. https://doi.org/10.1371/journal.pone.0172850

Zeng, Y*, Selyanin, V, Lukeš, M, Dean, J, Kaftan, D, Feng, F, Koblížek, M: Erratum: Characterization of the microaerophilic, bacteriochlorophyll a-containing bacterium Gemmatimonas phototrophica sp. nov., and emended descriptions of the genus Gemmatimonas and Gemmatimonas aurantiaca. International Journal of Systematic and Evolutionary Microbiology 67(2), 521-522, 2017. https://doi.org/10.1099/ijsem.0.001859

Janouskovec, J*, Keeling, PJ*: Evolution: Causality and the origin of parasitism. Current Biology 26, R174–R177, 2016. https://doi.org/10.1016/j.cub.2015.12.057

Tikhonenkov, DV, Janouškovec, J, Keeling, PJ, Mylnikov, AP*: The morphology, ultrastructure and SSU rRNA gene sequence of a new freshwater flagellate, Neobodo borokensis n. sp. (Kinetoplastea, Excavata). Journal of Eukaryotic Microbiology 63, 220–32, 2016. https://doi.org/10.1111/jeu.12271

Kirby, WA, Tikhonenkov, DV, Mylnikov, AP, Janouškovec, J, Lax, G, Simpson, AGB*: Characterization of Tulamoeba bucina n. sp., an extremely halotolerant amoeboflagellate heterolobosean belonging to the Tulamoeba-Pleurostomum clade (Tulamoebidae n. fam.). Journal of Eukaryotic Microbiology 62, 227–238, 2015. https://doi.org/10.1111/jeu.12172

Janouškovec, J*, Tikhonenkov, DV, Burki, F, Howe, AT, Kolísko, M, Mylnikov, AP, Keeling, PJ: Factors mediating plastid dependency and the origins of parasitism in apicomplexans and their close relatives. PNAS 112, 10200–07, 2015. https://doi.org/10.1073/pnas.1423790112

Flegontov, P, Michálek, J, Janouškovec, J, Lai, DH, Jirků, M, Hajdušková, E, Tomčala, A, Otto, TD, Keeling, PJ, Pain, A, Oborník, M*, Lukeš, J*: Divergent Mitochondrial Respiratory Chains in Phototrophic Relatives of Apicomplexan Parasites. Molecular Biology and Evolution 32(5), 1115-1131, 2015. https://doi.org/10.1093/molbev/msv021

Woo, YH*, Ansari, H, Otto, TD, Klinger, CM, Kolisko, M, Michálek, J, Saxena, A, Shanmugam, D, Tayyrov, A, Veluchamy, A, Ali, S, Bernal, A, del Campo, J, Cihlář, J, Flegontov, P,  Gornik, SG, Hajdušková, E, Horák, A, Janouškovec, J, Katris, NJ, Mast, FD,  Miranda-Saavedra, D, Mourier, T, Naeem, R, Nair, M, Panigrahi, AK, Rawlings, ND, Padron-Regalado, E, Ramaprasad, A, Samad, A, Tomčala, A, Wilkes, J, Neafsey, DE, Doerig, Ch, Bowler, Ch, Keeling, PJ, Roos, DS, Dacks, JB, Templeton, TJ, Waller, RF, Lukeš, J, Oborník, M, Pain, A: Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites. eLife 4, 2015. https://doi.org/10.7554/eLife.06974