Sobotka, R: Making proteins green; biosynthesis of chlorophyll-binding proteins in cyanobacteria. Photosynthesis Research 119, 223-232, 2014.

Sobotka, R., Komenda, J., Bumba, L., Tichý, M. (2005) Photosystem II assembly in CP47 mutant of Synechocystis sp. PCC 6803 is dependent on the level of chlorophyll precursors regulated by ferrochelatase. Journal of Biological Chemistry 280, 31595-31602.

Sobotka, R., Dühring, U., Komenda, J., Peter, E., Gardian, Z., Tichý, M., Grimm, B., Wilde, A. (2008) Improtance of the cyanobacterial Gun4 protein for chlorophyll metabolism and assembly of photosynthetic complexes. Journal of Biological Chemistry 283, 25794-25802.

Sobotka, R., McLean, S., Žuberová, M., Hunter, C.N., Tichý, M. (2008) The C-Terminal extension of ferrochelatase is critical for enzyme aktivity and for functioning of the tetrapyrrole pathway in Synechocystis strain PCC 6803. Journal of Bacteriology 190, 2086-2095.

Dobáková, M., Sobotka, R., Tichý, M., Komenda, J. (2009) Psb28 protein is i volved in the biogenesis of the photosystem II inner antenna CP47 (PsbB) in the cyanobacterium Synechocystis sp. PCC 6803. Plant Physiology 149, 1076-1086.

Sobotka, R, Tichý, M, Wilde, A, Hunter, AN: Functional assignments for the carboxyl-terminal domains of the ferrochelatase from Synechocystis PCC 6803: The CAB domain plays a regulatory role, and region II is essential for catalysis^1[W]. Plant Physiology 155, 1735-1747, 2011.

Wallner, T, Hagiwara, Y, Bernát, G, Sobotka, R, Reijerse, EJ, Frankenberg-Dinkel, N, Wilde, A: Inactivation of the conserved open reading frame ycf34 of Synechocystis sp. PCC6803 interferes dwith the photosynthetic electron transport chain. Biochimica et Biophysica Acta 1817, 2016-2026, 2012.

Kopečná, J, Komenda, J, Bučinská, L, Sobotka, R: Long-term acclimation of the cyanobacterium Synechocystis PCC6803 to high light is accompanied by an enhanced production of chlorophyll that is preferentially channeled to trimeric PSI. Plant Physiology 160, 2239-2250, 2012.

Kafková, L, Ammerman, ML, Faktorová, D, Fisk, JC, Zimmer, SL, Sobotka, R, Read, LK, Lukeš, J, Hashimi, H: Functional characterization of two paralogs that are novel RNA binding proteins influencing mitochondrial transcripts of Trypanosoma brucei. RNA 18, 1846-1861, 2012.

Hollingshead, S, Kopečná, J, Jackson, PJ, Canniffe, DP, Davidson, PA, Dickman, MJ, Sobotka, R, Hunter, CN: Conserved chloroplast open-reading freame ycf54 is required for activity of the magnesium protoporphyrin  monomethylester oxidative cyclase in Synechocystis PCC 6803. Journal of Biological Chemistry 287, 27823-27833, 2012.

Kaňa, R., Prášil, O., Komárek, O., Papageorgiou, G.C., Govindjee: Spectral characteristic of luorescence induction in a model cyanobacterium, Synechococcus sp. (PCC 7942). – Biochimica et Biophysica Acta – Bioenergetics 1787, 1170-1178, 2009.

Hála J., Vácha M., Dian J., Ambrož M., Adamec F., Prášil O., Komenda J., Nedbal L., Vácha F., Mareš J.: Structure and function of photosynthetic systems studied by hole burning spectroscopy. - J. Luminescence 48 and 49, 295-298, 1991.

Křístková, B, Martínková, L*, Rucká, L, Kotik, M, Kulik, N, Rädisch, R, Winkler, M, Pátek, M: Immobilization of aldoxime dehydratases on metal affinity resins and use of the immobilized catalysts for the synthesis of nitriles important in fragrance industry. Journal of Biotechnology 384, 12-19, 2024. https://doi.org/10.1016/j.jbiotec.2024.02.005

Masuda, T*, Mareš, J, Shiozaki, T, Inomura, K, Fujiwara, A, Prášil, O: Crocosphaera watsonii – A widespread nitrogen-fixing unicellular marine cyanobacterium. Journal of Phycology, 2024. https://doi.org/10.1111/jpy.13450

Rahimzadeh Karvansara, P, Komenda, J, Kopriva, S: Sulfur metabolism in cyanobacteria. In: Progress in Biochemistry and Biotechnology. Academic Press, 117-157, 2024. https://doi.org/10.1016/B978-0-443-13231-5.00018-0

Koník, P, Skotnicová, P, Gupta, S, Tichý, M, Sharma, S, Komenda, J, Sobotka, R, Krynická, V*: The cyanobacterial FtsH4 protease controls accumulation of protein factorsinvolved in the biogenesis of photosystem I. BBA - Bioenergetics 1865(1), 149017, 2024. https://doi.org/10.1016/j.bbabio.2023.149017

Skotnicová, P, Srivastava, A, Aggarwal, D, Talbot, J, Karlínová, I, Moos, M, Mareš, J, Koník, P, Šimek, P, Tichý, M, Sobotka, R*: A thylakoid biogenesis BtpA protein is required for the initial step of tetrapyrrole biosynthesis in cyanobacteria. New Phytologist 241(3), 1236-1249, 2024. https://doi.org/10.1111/nph.19397

Kaňa, R*, Šedivá, B, Prášil, O: Microdomains heterogenity in the thylakoid membrane proteins visualized by super-resolution microscopy. Photosynthetica 61(4), 483-491, 2023. https://doi.org/10.32615/ps.2023.043

Masuda, T*, Majerová, D, Piwosz, K, Tsurumaki, T, Fujita, Y, Prášil, O: Immunocytochemical Visualization of Proteins from Cyanobacterial Cells with High Autofluorescence of Phycoerythrin and Phycourobilin. Journal of Visualized Experiments 199, e65168, 2023. https://doi.org/10.3791/65168

Kulik, N*, Minofar, B, Jugl, A, Pekař, M: Computational Study of Complex Formation between Hyaluronan Polymers and Polyarginine Peptides at Various Ratios. Langmuir 39(40), 14212-14222, 2023. https://doi.org/10.1021/acs.langmuir.3c01318