Komenda, J, Sobotka, R: Cyanobacterial high-light-inducible proteins — Protectors of chlorophyll–protein synthesis and assembly.  Biochimica et Biophysica Acta-Bioenergetics 1857(3), 288-95, 2016.

Bárcenas-Pérez, D, Lukeš, M, Hrouzek, P, Zápal, J, Kuzma, M, Kopecký, J, Kubáč, D, Arredondo-Vega, BO, Cheel, J*: Bio-production of eicosapentaenoic acid from the diatiom Nanofrustulum shiloi via two-step high performance countercurrent chromatography. Journal of Applied Phycology 34, 2995-3010, 2022. https://doi.org/10.1007/s10811-022-02816-w

Bárcenas-Pérez, D, Lukeš, M, Hrouzek, P, Kubáč, D, Kopecký, J, Kaštánek, P, Cheel, J*: A biorefinery approach to obtain docosahexaenoic acid and docosapentaenoic acid n-6 from Schizochytrium using high performance countercurrent chromatography. Algal Research 55, 102241, 2021. https://doi.org/10.1016/j.algal.2021.102241

Bečková, M, Sobotka, R, Komenda, J*: Photosystem II antenna modules CP43 and CP47 do not form a stable ‘no reaction centre complex’ in the cyanobacterium Synechocystis sp. PCC 6803. Photosynthesis Research 152(3), 363-371, 2022. https://doi.org/10.1007/s11120-022-00896-w

Bečková, M, Gardian, Z, Yu, J, Konik, P, Nixon, PJ, Komenda, J*: Association of Psb28 and Psb27 Proteins with PSII-PSI Supercomplexes upon Exposure of Synechocystis sp. PCC 6803 to High Light. Molecular Plant 10(1), 62-72, 2017. https://doi.org/10.1016/j.molp.2016.08.001

Bečková, M, Yu, J, Krynická, V, Kozlo, A, Shao, S, Koník, P, Komenda, J*, Murray, JW*, Nixon, PJ*: Structure of Psb29/Thf1 and its association with the FtsH protease complex involved in photosystem II repair in cyanobacteria. Philosophical Transactions B 372(1730), 20160394, 2017. https://dx.doi.org/10.1098%2Frstb.2016.0394

Bučinská, L, Kiss, É, Koník, P, Knoppová, J, Komenda, J, Sobotka, R*: The Ribosome-Bound Protein Pam68 Promotes Insertion of Chlorophyll into the CP47 Subunit of Photosystem II. Plant Physiology 176(4), 2931-2942, 2018. https://doi.org/10.1104/pp.18.00061

Camara Manoel, JA, Štěrbová, K, Saini, MK, Bárcenas-Pérez, D, Cheel, J, Grivalský, T, Lakatos, GE, Lukeš, M, Urajová, P, Ferreira, A, Figueiredo, D, Gouveia, L, Masojídek, J, Saurav, K*: Microalgae-associated Stenotrophomonas maltophilia enhances lutein production and biostimulant activity in Monoraphidium sp. Algal Research 91, 104250, 2025. https://doi.org/10.1016/j.algal.2025.104250

Činčárová, D, Hájek, J, Dobřichovský, M, Lukeš, M, Hrouzek, P*: Recommendations on the quantitative analysis of pheophorbides photosensitizers present in algal biomass intended as food supplement. Algal Research 56, 102298, 2021. https://doi.org/10.1016/j.algal.2021.102298

Felcmanová, K, Lukeš, M, Kotabová, E, Lawrenz, E, Halsey, KH, Prášil, O*: Carbon use efficiencies and allocation strategies in Prochlorococcus marinus strain PCC 9511 during nitrogen-limited growth. Photosynthesis Research 134(1), 71-82, 2017. https://doi.org/10.1007/s11120-017-0418-3

Janouškovec, J*, Sobotka, R, Lai, D-H, Flegontov, P, Koník, P, Komenda, J, Ali, S, Prášil, O, Pain, A, Oborník, M, Lukeš, J, Keeling, PJ: Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia. Molecular Biology and Evolution 30, 2447–62, 2013. https://doi.org/10.1093/molbev/mst144

Kaňa, R*, Steinbach, G, Sobotka, R, Vámosi, G, Komenda, J: Fast Diffusion of the Unassembled PetC1-GFP Protein in the Cyanobacterial Thylakoid Membrane. Life 11(1), 15, 2021. https://doi.org/10.3390/life11010015

Kiss, E, Knoppová, J, Pascual Aznar, G, Pilný, J, Yu, J, Halada, P, Nixon, PJ, Sobotka, R, Komenda, J*: A Photosynthesis-Specific Rubredoxin-Like Protein Is Required for Efficient Associaton of the D1 and D2 Proteins during the Initial Steps of Photosystem II Assembly. Plant Cell 31(9), 2241-2258, 2019. https://doi.org/10.1105/tpc.19.00155

Kiss, E*, Moos, M, Mareš, J, Opekar, S, Tomanová, L, Anindita, PD, Lukeš, M, Urajová, P, Sobotka, R: Cyanophycinase is required for heterotrophy in cyanobacteria. Journal of Biological Chemistry 301(12), 110791, 2025. https://doi.org/10.1016/j.jbc.2025.110791

Knoppová, J, Sobotka, R, Yu, J, Bečková, M, Pilný, J, Trinugroho, JP, Csefalvay, L, Bína, D, Nixon, PJ, Komenda, J*: Assembly of D1/D2 complexes of photosystem II: Binding of pigments and a network of auxiliary proteins. Plant Physiology 189(2), 790-804, 2022. https://doi.org/10.1093/plphys/kiac045

Knoppová, J, Yu, J, Janouškovec, J, Halada, P, Nixon, PJ, Whitelegge, JP, Komenda, J*: The Photosystem II Assembly Factor Ycf48 from the Cyanobacterium Synechocystis sp. PCC 6803 Is Lipidated Using an Atypical Lipobox Sequence. International Journal of Molecular Sciences 22(7), 3733, 2021. https://doi.org/10.3390/ijms22073733

Knoppová, J*, Komenda, J: Sequential deletions of photosystem II assembly factors Ycf48, Ycf39 and Pam68 result in progressive loss of autotrophy in the cyanobacterium Synechocystis PCC 6803. Folia Microbiologica 64(5), 683-689, 2019. https://doi.org/10.1007/s12223-019-00736-w

Komenda, J, Krynická, V, Zakar, T*: Isolation of Thylakoid Membranes from the Cyanobacterium Synechocystis sp. PCC 6803 and Analysis of Their Photosynthetic Pigment-protein Complexes by Clear Native-PAGE. Bio-protocol 9(1), e3126, 2019. https://doi.org/10.21769/bioprotoc.3126

Komenda, J, Sobotka, R, Nixon, PJ*: The biogenesis and maintenance of PSII: Recent advances and current challenges. Plant Cell 36(10), 3997-4013, 2024. https://doi.org/10.1093/plcell/koae082

Komenda, J*, Sobotka R: Chlorophyll-binding subunits of photosystem I and II: Biosynthesis, chlorophyll incorporation and assembly. Advances in Botanical Research 91, 195-223, 2019. https://doi.org/10.1016/bs.abr.2019.02.001