Komenda, J, Sobotka, R: Cyanobacterial high-light-inducible proteins — Protectors of chlorophyll–protein synthesis and assembly.  Biochimica et Biophysica Acta-Bioenergetics 1857(3), 288-95, 2016.

Bečková, M, Sobotka, R, Komenda, J*: Photosystem II antenna modules CP43 and CP47 do not form a stable ‘no reaction centre complex’ in the cyanobacterium Synechocystis sp. PCC 6803. Photosynthesis Research 152(3), 363-371, 2022. https://doi.org/10.1007/s11120-022-00896-w

Bučinská, L, Kiss, É, Koník, P, Knoppová, J, Komenda, J, Sobotka, R*: The Ribosome-Bound Protein Pam68 Promotes Insertion of Chlorophyll into the CP47 Subunit of Photosystem II. Plant Physiology 176(4), 2931-2942, 2018. https://doi.org/10.1104/pp.18.00061

Dachev, M, Bína, D, Sobotka, R, Moravcová, L, Gardian, Z, Kaftan, D, Šlouf, V, Fuciman, M, Polívka, T, Koblížek, M*: Unique double concentric ring organization of light harvesting complexes in Gemmatimonas phototrophica. Plos Biology 15(12), e2003943, 2017. https://doi.org/10.1371/journal.pbio.2003943

Janouškovec, J*, Sobotka, R, Lai, D-H, Flegontov, P, Koník, P, Komenda, J, Ali, S, Prášil, O, Pain, A, Oborník, M, Lukeš, J, Keeling, PJ: Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia. Molecular Biology and Evolution 30, 2447–62, 2013. https://doi.org/10.1093/molbev/mst144

Kaňa, R*, Steinbach, G, Sobotka, R, Vámosi, G, Komenda, J: Fast Diffusion of the Unassembled PetC1-GFP Protein in the Cyanobacterial Thylakoid Membrane. Life 11(1), 15, 2021. https://doi.org/10.3390/life11010015

Kiss, É, Talbot, J, Adams, NBP, Opekar, S, Moos, M, Pilný, J, Kvasov, T, Schneider, E, Koník, P, Šimek, P, Sobotka, R*: Chlorophyll biosynthesis under the control of arginine metabolism. Cell Reports 42(2), 113265, 2023. https://doi.org/10.1016/j.celrep.2023.113265

Kiss, E, Knoppová, J, Pascual Aznar, G, Pilný, J, Yu, J, Halada, P, Nixon, PJ, Sobotka, R, Komenda, J*: A Photosynthesis-Specific Rubredoxin-Like Protein Is Required for Efficient Associaton of the D1 and D2 Proteins during the Initial Steps of Photosystem II Assembly. Plant Cell 31(9), 2241-2258, 2019. https://doi.org/10.1105/tpc.19.00155

Knoppová, J, Sobotka, R, Yu, J, Bečková, M, Pilný, J, Trinugroho, JP, Csefalvay, L, Bína, D, Nixon, PJ, Komenda, J*: Assembly of D1/D2 complexes of photosystem II: Binding of pigments and a network of auxiliary proteins. Plant Physiology 189(2), 790-804, 2022. https://doi.org/10.1093/plphys/kiac045

Komenda, J*, Sobotka R: Chlorophyll-binding subunits of photosystem I and II: Biosynthesis, chlorophyll incorporation and assembly. Advances in Botanical Research 91, 195-223, 2019. https://doi.org/10.1016/bs.abr.2019.02.001

Konert, MM*, Wysocka, A, Koník, P, Sobotka, R: High-light-inducible proteins HliA and HliB: pigment binding and protein-protein interactions. Photosynthesis Research 152(3), 317-332, 2022. https://doi.org/10.1007/s11120-022-00904-z

Koník, P, Skotnicová, P, Gupta, S, Tichý, M, Sharma, S, Komenda, J, Sobotka, R, Krynická, V*: The cyanobacterial FtsH4 protease controls accumulation of protein factorsinvolved in the biogenesis of photosystem I. BBA - Bioenergetics 1865(1), 149017, 2024. https://doi.org/10.1016/j.bbabio.2023.149017

Koskela, MM, Skotnicová, P, Kiss, E, Sobotka, R*: Purification of Protein-complexes from the Cyanobacterium Synechocystis sp. PCC 6803 Using FLAG-affinity Chromatography. Bio-protocol 10(10), e3616, 2020. https://doi.org/10.21769/BioProtoc.3616

Kuthanová Trsková, E, Belgio, E, Yeates, AM, Sobotka, R, Ruban, AV, Kaňa, R*: Antenna proton sensitivity determines photosynthetic light harvesting strategy. Journal of Experimental Botany 69(18), E7824-E7833, 2018. https://doi.org/10.1093/jxb/ery240

Kuthanová Trsková, E, Bína, D, Santabarbara, S, Sobotka, R, Kaňa, R, Belgio, E*: Isolation and characterization of CAC antenna proteins and photosystem I supercomplex from the cryptophytic alga Rhodomonas salina. Physiologia Plantarum 166(1), 309-319, 2019. https://doi.org/10.1111/ppl.12928

Linhartová, M, Skotnicová, P, Hakkila, K, Tichý, M, Komenda, J, Knoppová, J, Gilabert, JF, Guallar, V, Tyystjärvi, T, Sobotka, R*: Mutations Suppressing the Lack of Prepilin Peptidase Provide Insights Into the Maturation of the Major Pilin Protein in Cyanobacteria. Frontiers in Microbiology 12, 756912, 2021. https://doi.org/10.3389/fmicb.2021.756912

Masuda, T, Bečková, M, Turóczy, Z, Pilný, J, Sobotka, R, Trinugroho, JP, Nixon, PJ, Prášil, O*, Komenda, J*: Accumulation of Cyanobacterial Photosystem II Containing the 'Rogue' D1 Subunit Is Controlled by FtsH Protease and Synthesis of the Standard D1 Protein. Plant and Cell Physiology 64(6), 660-673, 2023. https://doi.org/10.1093/pcp/pcad027

Noda, J*, Mühlroth, A, Bučinská, L, Dean, J, Bones, AM, Sobotka, R*: Tools for biotechnological studies of the freshwater alga Nannochloropsis limnetica: antibiotic resistance and protoplast production. Journal of Applied Phycology 29(2), 853-863, 2017. https://doi.org/10.1007/s10811-016-1001-6

Pascual-Aznar, G, Konert, G, Bečková, M, Kotabová, E, Gardian, Z, Knoppová, J, Bučinská, L, Kaňa, R, Sobotka, R, Komenda, J*: Psb35 Protein Stabilizes the CP47 Assembly Module and Associated High-Light Inducible Proteins during the Biogenesis of Photosystem II in the Cyanobacterium Synechocystis sp. PCC6803. Plant and Cell Physiology 62(1), 178-190, 2021. https://doi.org/10.1093/pcp/pcaa148

Pazderník, M, Mareš, J, Pilný, J, Sobotka, R*: The antenna-like domain of the cyanobacterial ferrochelatase can bind chlorophyll and carotenoids in an energy-dissipative configuration. Journal of Biological Chemistry 294(29), 11131-11143, 2019. https://doi.org/10.1074/jbc.ra119.008434